Stem-loop cel-mir-2208b

Accession

MI0010957

Description

Caenorhabditis elegans cel-mir-2208b precursor miRNA mir-2208

Gene
family

RF03318; mir-2208

Literature search

1 open access papers mention cel-mir-2208b
(2 sentences)

Sequence

557 reads, 3 reads per million, 11 experiments

AAGUGUACCCGGAUCUGAUAUCCuaucaccaaaaagaggAUGCAGAUUUUGGUACACUUCA
(((((((((.(((((((.((((((............))))))))))))).)))))))))..

Structure

--         C       A      aucac 
  AAGUGUACC GGAUCUG UAUCCu     c
  ||||||||| ||||||| ||||||      
  UUCACAUGG UUUAGAC GUAgga     a
AC         U       -      gaaaa 

Annotation confidence Medium

Genome context

chrIV: 1026580-1026640 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from cel-mir-2208b

Mature cel-miR-2208b-5p

• Accession: MIMAT0011429
• Description: Caenorhabditis elegans cel-miR-2208b-5p mature miRNA
• Sequence: 1 - AAGUGUACCCGGAUCUGAUAUCC - 23
• Evidence: experimental ; Illumina [1]

Mature cel-miR-2208b-3p

• Accession: MIMAT0011430
• Description: Caenorhabditis elegans cel-miR-2208b-3p mature miRNA
• Sequence: 40 - AUGCAGAUUUUGGUACACUUCA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54