Stem-loop cel-mir-2209a

Accession

MI0010958

Description

Caenorhabditis elegans cel-mir-2209a precursor miRNA mir-2209

Gene
family

RF03223; mir-2209

Literature search

2 open access papers mention cel-mir-2209a
(2 sentences)

Sequence

5331 reads, 37 reads per million, 15 experiments

GAGUGUAACCACUCUUCUCCUUCcgaguauugauuaucgagaAGAGAUCAGCGGUUACACUACA
.(((((((((.((..((((.((((((..........))).)))))))..)).)))))))))...

Structure

--G         A  CU    C   -   guau 
   AGUGUAACC CU  UCUC UUC cga    u
   ||||||||| ||  |||| ||| |||     
   UCACAUUGG GA  AGAG Aag gcu    g
ACA         C  CU    -   a   auua 

Annotation confidence Low

Genome context

chrIV: 1027101-1027164 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from cel-mir-2209a

Mature cel-miR-2209a-5p

• Accession: MIMAT0011431
• Description: Caenorhabditis elegans cel-miR-2209a-5p mature miRNA
• Sequence: 1 - GAGUGUAACCACUCUUCUCCUUC - 23
• Evidence: experimental ; Illumina [1]

Mature cel-miR-2209a-3p

• Accession: MIMAT0011432
• Description: Caenorhabditis elegans cel-miR-2209a-3p mature miRNA
• Sequence: 43 - AGAGAUCAGCGGUUACACUACA - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54