Stem-loop cel-mir-2209c

Accession

MI0010959

Description

Caenorhabditis elegans cel-mir-2209c precursor miRNA

Literature search

2 open access papers mention cel-mir-2209c
(2 sentences)

Sequence

47 reads, 1 reads per million, 9 experiments

GAGUGUAACCGCACGUCUUGUUUcaaaacucaauauauggaAAAAGACCACCGGUUACACUACA
.((((((((((...(((((.(((((............))))).)))))...))))))))))...

Structure

--G          CAC     G     aaacu 
   AGUGUAACCG   GUCUU UUUca     c
   ||||||||||   ||||| |||||      
   UCACAUUGGC   CAGAA Aaggu     a
ACA          CAC     A     auaua 

Annotation confidence Low

Genome context

chrIV: 1027218-1027281 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from cel-mir-2209c

Mature cel-miR-2209c-5p

• Accession: MIMAT0011433
• Description: Caenorhabditis elegans cel-miR-2209c-5p mature miRNA
• Sequence: 1 - GAGUGUAACCGCACGUCUUGUUU - 23
• Evidence: experimental ; Illumina [1]

Mature cel-miR-2209c-3p

• Accession: MIMAT0011434
• Description: Caenorhabditis elegans cel-miR-2209c-3p mature miRNA
• Sequence: 42 - AAAAGACCACCGGUUACACUACA - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54