Stem-loop cel-mir-2219

Accession

MI0010972

Description

Caenorhabditis elegans cel-mir-2219 precursor miRNA

Literature search

1 open access papers mention cel-mir-2219
(1 sentences)

Sequence

404 reads, 7.0 reads per million, 66 experiments

ACAGCUUUCUCUCGCACAUCGUCAGcuagauuugaacucuguaugaaagcugaCGAAGUGCGAGGGAAAGCUGAAG
.((((((((((((((((.(((((((((....................))))))))).))))))))))))))))...

Structure

--A                A         agauuugaa 
   CAGCUUUCUCUCGCAC UCGUCAGcu         c
   |||||||||||||||| |||||||||          
   GUCGAAAGGGAGCGUG AGCagucga         u
GAA                A         aaguauguc 

Annotation confidence Medium

Genome context

chrV: 2924580-2924655 [-]

Mature cel-miR-2219-5p

• Accession: MIMAT0011459
• Description: Caenorhabditis elegans cel-miR-2219-5p mature miRNA
• Sequence: 1 - ACAGCUUUCUCUCGCACAUCGUCAG - 25
• Evidence: experimental ; Illumina [1-2]

Mature cel-miR-2219-3p

• Accession: MIMAT0011460
• Description: Caenorhabditis elegans cel-miR-2219-3p mature miRNA
• Sequence: 54 - CGAAGUGCGAGGGAAAGCUGAAG - 76
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


2. PubMed ID: 21307183
   Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer
   "Warf MB, Johnson WE, Bass BL"
   "RNA (2011) 17:563-577