Stem-loop cbr-mir-35e

Accession

MI0010979

Description

Caenorhabditis briggsae cbr-mir-35e precursor miRNA

Sequence

295373 reads, 27933.0 reads per million, 3 experiments

uaaucuuugagguccgagucggaccugCCCUGAUUCUUGCUGCAGUGAUAuuucgaacggcuagauuaUCACCGGGUGACAAUUAGGACagguccgaccccuagugacccggauugc
((((((..(.(((((..((((((((((.(((((((.(((((...((((((..((.........)).))))))..))))).))))))).)))))))))).....).))))))))))).

Structure

-      uu a    - ---ga          C       C     GCA      uu  gaa 
 uaaucu  g gguc c     gucggaccug CCUGAUU UUGCU   GUGAUA  uc   c
 ||||||  | |||| |     |||||||||| ||||||| |||||   ||||||  ||   g
 guuagg  c ccag g     cagccuggaC GGAUUAA AGUGG   CACUau  ag   g
c      -- -    u auccc          A       C     -GC      -u  auc 

Annotation confidence High

Genome context

chrX: 15371263-15371379 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from cbr-mir-35e

Mature cbr-miR-35e-5p

• Accession: MIMAT0053573
• Description: Caenorhabditis briggsae cbr-miR-35e-5p mature miRNA
• Sequence: 28 - CCCUGAUUCUUGCUGCAGUGAUA - 50
• Evidence: experimental ; 454 [1]

Mature cbr-miR-35e-3p

• Accession: MIMAT0011468
• Description: Caenorhabditis briggsae cbr-miR-35e-3p mature miRNA
• Sequence: 69 - UCACCGGGUGACAAUUAGGAC - 89
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074