Stem-loop cbr-mir-35d

Accession

MI0010981

Description

Caenorhabditis briggsae cbr-mir-35d precursor miRNA mir-35

Gene
family

RF02254; mir-35

Sequence

cccaguuccggacacuCGCAGGUUUUUGCUUCGGUGAUauucgaagagccguuaUCACCGGGUGAAAAUUUGCAAGuguccgguaacugg
.(((((((((((((((.(((((((((((((.((((((((..((......)).))))))))))))))))))))).))))))))).))))))

Structure

c      -         C             U        uu  aa 
 ccaguu ccggacacu GCAGGUUUUUGCU CGGUGAUa  cg  g
 |||||| ||||||||| ||||||||||||| ||||||||  ||   
 ggucaa ggccuguGA CGUUUAAAAGUGG GCCACUau  gc  a
-      u         A             -        -u  cg 

Annotation confidence Low

Genome context

chrII: 8378172-8378261 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from cbr-mir-35d

Mature cbr-miR-35d-5p

• Accession: MIMAT0011469
• Description: Caenorhabditis briggsae cbr-miR-35d-5p mature miRNA
• Sequence: 17 - CGCAGGUUUUUGCUUCGGUGAU - 38
• Evidence: experimental ; 454 [1]

Mature cbr-miR-35d-3p

• Accession: MIMAT0011470
• Description: Caenorhabditis briggsae cbr-miR-35d-3p mature miRNA
• Sequence: 55 - UCACCGGGUGAAAAUUUGCAAG - 76
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074