Stem-loop cbr-mir-235b

Accession

MI0010983

Description

Caenorhabditis briggsae cbr-mir-235b precursor miRNA

Sequence

ucugaaaucuuggaucAGGCUCUGGUCAUGUGCAUAUAUUgcgcuauauaugcuaaUAUUGCACUUGACCAUGGCCUcgucuagaaaguaagacaguuucaga
((((((((.((((((.(((((.((((((.(((((.((((((.((.......))))))))))))).)))))).))))).))))))...........))))))))

Structure

        ----------c      c     C      U     U      c  ua 
ucugaaau           uuggau AGGCU UGGUCA GUGCA AUAUUg gc  u
||||||||           |||||| ||||| |||||| ||||| |||||| ||  a
agacuuug           gaucug UCCGG ACCAGU CACGU UAUaau cg  u
        acagaaugaaa      c     U      U     -      -  ua 

Annotation confidence Not enough data

Genome context

chrI: 10817837-10817939 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cbr-mir-235b

Mature cbr-miR-235b-5p

• Accession: MIMAT0011473
• Description: Caenorhabditis briggsae cbr-miR-235b-5p mature miRNA
• Sequence: 17 - AGGCUCUGGUCAUGUGCAUAUAUU - 40
• Evidence: experimental ; 454 [1]

Mature cbr-miR-235b-3p

• Accession: MIMAT0011474
• Description: Caenorhabditis briggsae cbr-miR-235b-3p mature miRNA
• Sequence: 57 - UAUUGCACUUGACCAUGGCCU - 77
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074