Stem-loop cbr-mir-35b-11

Accession

MI0010999

Description

Caenorhabditis briggsae cbr-mir-35b-11 precursor miRNA

Sequence

221577 reads, 18634.0 reads per million, 3 experiments

ccgaaggucugggucgagccucCGCUGGUUUUUUACCGCGGUGAUAuuccaaauaaaaugguuaUCACCGGGUGAAAACUGGUAGAGguccgauccagucguaccaucg
.(((.(((((((((((.(((((.((((((((((.(((.((((((((..(((.......))).))))))))))))))))))))).))))).))))))))....))).)))

Structure

c   a   ----        a     C          U   G        uu   aa 
 cga ggu    cugggucg gccuc GCUGGUUUUU ACC CGGUGAUA  cca  u
 ||| |||    |||||||| ||||| |||||||||| ||| ||||||||  |||  a
 gcu cca    gaccuagc ugGAG UGGUCAAAAG UGG GCCACUau  ggu  a
-   a   ugcu        c     A          -   -        -u   aa 

Annotation confidence High

Genome context

chrX: 15373460-15373568 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from cbr-mir-35b-11

Mature cbr-miR-35b-11-5p

• Accession: MIMAT0053576
• Description: Caenorhabditis briggsae cbr-miR-35b-11-5p mature miRNA
• Sequence: 23 - CGCUGGUUUUUUACCGCGGUGAUA - 46
• Evidence: experimental ; 454 [1]

Mature cbr-miR-35b-3p

• Accession: MIMAT0011483
• Description: Caenorhabditis briggsae cbr-miR-35b-3p mature miRNA
• Sequence: 65 - UCACCGGGUGAAAACUGGUAGAG - 87
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074