Stem-loop cbr-mir-35b-13

Accession

MI0011001

Description

Caenorhabditis briggsae cbr-mir-35b-13 precursor miRNA

Sequence

226493 reads, 19116.0 reads per million, 3 experiments

cugggucggaccucUGCUGGUAUUCUCUGCGAUGAUAuuuugaaaaaagcuuaUCACCGGGUGAAAACUGGUAGAGguccgauccagu
(((((((((((((((((((((.(((((((.(.(((((..((......))..)))))))))).))).))))))))))))))))))))).

Structure

-                     A   -    C A     uu  ga 
 cugggucggaccucUGCUGGU UUC UCUG G UGAUA  uu  a
 ||||||||||||||||||||| ||| |||| | |||||  ||   
 gaccuagccugGAGAUGGUCA AAG GGGC C ACUau  ga  a
u                     A   U    - -     uc  aa 

Annotation confidence High

Genome context

chrX: 15373775-15373862 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from cbr-mir-35b-13

Mature cbr-miR-35b-13-5p

• Accession: MIMAT0053577
• Description: Caenorhabditis briggsae cbr-miR-35b-13-5p mature miRNA
• Sequence: 15 - UGCUGGUAUUCUCUGCGAUGAUA - 37
• Evidence: experimental ; 454 [1]

Mature cbr-miR-35b-3p

• Accession: MIMAT0011483
• Description: Caenorhabditis briggsae cbr-miR-35b-3p mature miRNA
• Sequence: 54 - UCACCGGGUGAAAACUGGUAGAG - 76
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074