Stem-loop cbr-mir-41b

Accession

MI0011006

Description

Caenorhabditis briggsae cbr-mir-41b precursor miRNA

Sequence

619644 reads, 57748.0 reads per million, 3 experiments

gcggaucucucuggccuuGGAGGUUUCUCAUCGUAGUGAUAcaaaaccaaaaccauacgauaUCACCGGGUGAGAAUCUUCCAAgguaggaggauccugc
(((((((.((((.((((((((((.((((((((...((((((...................))))))..)))))))).)))))))))).))))))))).))

Structure

  -     u    g          U        GUA      caaaacca 
gc ggauc cucu gccuuGGAGG UUCUCAUC   GUGAUA        a
|| ||||| |||| |||||||||| ||||||||   ||||||        a
cg ccuag gagg uggAACCUUC AAGAGUGG   CACUau        a
  u     -    a          U        -GC      agcauacc 

Annotation confidence High

Genome context

chrII: 8378050-8378149 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from cbr-mir-41b

Mature cbr-miR-41b-5p

• Accession: MIMAT0053582
• Description: Caenorhabditis briggsae cbr-miR-41b-5p mature miRNA
• Sequence: 19 - GGAGGUUUCUCAUCGUAGUGAUA - 41
• Evidence: experimental ; 454 [1]

Mature cbr-miR-41b-3p

• Accession: MIMAT0011489
• Description: Caenorhabditis briggsae cbr-miR-41b-3p mature miRNA
• Sequence: 63 - UCACCGGGUGAGAAUCUUCCAA - 84
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074