Stem-loop cbr-mir-64b

Accession

MI0011008

Description

Caenorhabditis briggsae cbr-mir-64b precursor miRNA

Sequence

4766 reads, 425.0 reads per million, 3 experiments

uccguuauucuuuccgaaggccccgccuucCAUGACACCCAAGCGUGUCUGGAaugacagaaugguccucCGGACCGCUGAUGUGGCAUGAAcggcgggaguuggucccuaaaagga
(((..........((((....((((((...((((.(((...((((.(((((((..(((......))).)))))))))))...))).))))...))))))..)))).........)))

Structure

   guuauucuuu    aggc      uuc    A   CCA    U       au   ag 
ucc          ccga    cccgcc   CAUG CAC   AGCG GUCUGGA  gac  a
|||          ||||    ||||||   |||| |||   |||| |||||||  |||   
agg          gguu    gggcgg   GUAC GUG   UCGC CAGGCcu  cug  a
   -aaaaucccu    --ga      cAA    G   UAG    -       -c   gu 

Annotation confidence High

Genome context

chrIII: 869080-869196 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from cbr-mir-64b

Mature cbr-miR-64b-5p

• Accession: MIMAT0053583
• Description: Caenorhabditis briggsae cbr-miR-64b-5p mature miRNA
• Sequence: 31 - CAUGACACCCAAGCGUGUCUGGA - 53
• Evidence: experimental ; 454 [1]

Mature cbr-miR-64b-3p

• Accession: MIMAT0011490
• Description: Caenorhabditis briggsae cbr-miR-64b-3p mature miRNA
• Sequence: 71 - CGGACCGCUGAUGUGGCAUGAA - 92
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074