Stem-loop cbr-mir-54d

Accession

MI0011014

Description

Caenorhabditis briggsae cbr-mir-54d precursor miRNA

Sequence

170947 reads, 19904.0 reads per million, 3 experiments

aaagcgcuaggugauccuugacuAGGAUAUAAAAAGAACGUGUGUACAugaauccagugaauacuugUACCCGUAUUUUUAUAUCCGAGccaaggauugccguugaucguuuuc
((((((...(((((((((((.((.(((((((((((..(((.(.(((((.................))))))))).))))))))))).)).)))))))))))......)))))).

Structure

-      ---cua           a  A           GA   U U     ugaaucc 
 aaagcg      ggugauccuug cu GGAUAUAAAAA  ACG G GUACA       a
 ||||||      ||||||||||| || |||||||||||  ||| | |||||       g
 uuuugc      ccguuaggaac GA CCUAUAUUUUU  UGC C CAUgu       u
c      uaguug           c  G           -A   - -     ucauaag 

Annotation confidence High

Genome context

chrX: 16964062-16964175 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cbr-mir-54d

Mature cbr-miR-54d-5p

• Accession: MIMAT0053586
• Description: Caenorhabditis briggsae cbr-miR-54d-5p mature miRNA
• Sequence: 24 - AGGAUAUAAAAAGAACGUGUGUACA - 48
• Evidence: experimental ; 454 [1]

Mature cbr-miR-54d-3p

• Accession: MIMAT0011496
• Description: Caenorhabditis briggsae cbr-miR-54d-3p mature miRNA
• Sequence: 68 - UACCCGUAUUUUUAUAUCCGAG - 89
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074