Stem-loop cbr-mir-74b

Accession

MI0011017

Description

Caenorhabditis briggsae cbr-mir-74b precursor miRNA mir-74

Gene
family

RF00830; mir-74

Sequence

146345 reads, 13597.0 reads per million, 3 experiments

gcuacuauucaagccccugccacacuuuUGGACUUCCUUCUCGUUCCCAGCAaaaugcacaguuugcUGGCAAGACUAGGCAGUCCAGAuguguggcagcggcaguuuuuggugagu
(((((((.....(((.(((((((((.((((((((.(((..((....((((((((........))))))))...))..))).)))))))).))))))))).)))......)))).)))

Structure

   -    -uucaa   c         u        U   UC  GUUC        aug 
gcu acua      gcc cugccacac uuUGGACU CCU  UC    CCAGCAaa   c
||| ||||      ||| ||||||||| |||||||| |||  ||    ||||||||    
uga uggu      cgg gacggugug AGACCUGA GGA  AG    GGUcguuu   a
   g    uuuuga   c         u        C   UC  -AAC        gac 

Annotation confidence High

Genome context

chrX: 4426711-4426827 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cbr-mir-74b

Mature cbr-miR-74b-5p

• Accession: MIMAT0011501
• Description: Caenorhabditis briggsae cbr-miR-74b-5p mature miRNA
• Sequence: 29 - UGGACUUCCUUCUCGUUCCCAGCA - 52
• Evidence: experimental ; 454 [1]

Mature cbr-miR-74b-3p

• Accession: MIMAT0011502
• Description: Caenorhabditis briggsae cbr-miR-74b-3p mature miRNA
• Sequence: 68 - UGGCAAGACUAGGCAGUCCAGA - 89
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074