miRBase entry: crm-mir-786

Stem-loop crm-mir-786


Accession
MI0011018
Description
Caenorhabditis remanei crm-mir-786 precursor miRNA


Sequence

12348 reads, 110.0 reads per million, 9 experiments
aguaaguuucgggacaagucccaauAGAGUCUCGGACAGGGCAUUUACAuacaagauaaauuugUAAUGCCCUUGCUGAGAUUCCAUugguaucacguuccacauuuau
.((((((...(((((..((.(((((.(((((((((..((((((((.(((.............)))))))))))..))))))))).))))).))...)))))..))))))

Structure
a      uuc     -aa  c     A         AC        U   uacaa 
 guaagu   gggac   gu ccaau GAGUCUCGG  AGGGCAUU ACA     g
 ||||||   |||||   || ||||| |||||||||  |||||||| |||     a
 uauuua   ccuug   ua gguUA CUUAGAGUC  UCCCGUAA Ugu     u
-      -ca     cac  u     C         GU        -   uuaaa 


Annotation confidence High
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Genome context
Crem_Contig0: 181392-181500 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from crm-mir-786
Name Accession Chromosome Start End Strand Confidence




Database links

Mature crm-miR-786-5p

Accession MIMAT0056825
Description Caenorhabditis remanei crm-miR-786-5p mature miRNA
Sequence 26 - AGAGUCUCGGACAGGGCAUUUACA - 49
Evidence experimental
454 [1]

Mature crm-miR-786-3p

Accession MIMAT0011503
Description Caenorhabditis remanei crm-miR-786-3p mature miRNA
Sequence 65 - UAAUGCCCUUGCUGAGAUUCCAU - 87
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074