Accession
MI0011020
Description
Caenorhabditis remanei
crm-mir-40 precursor miRNA
Sequence
606045
reads,
5694.0
reads per million, 9 experiments
aacccugcccguaaccuAGUUGAUGUUCAUCGCAGUGAUAugacgcaucaguacauuccuuaUCACCGGGUGUACAUCAGCUAGggugcggguucagguu
...(((((((((..((((((((((((.((((.(.((((((((((......)).)).....)))))).))))).))))))))))))..)))))..))))..
...(((((((((..((((((((((((.((((.(.((((((((((......)).)).....)))))).))))).))))))))))))..)))))..))))..
Structure
aac -- aa U G A ----- - gc ccug cccgu ccuAGUUGAUGU CAUC C GUGAUA ug ac a |||| ||||| |||||||||||| |||| | |||||| || || ggac gggcg gGAUCGACUACA GUGG G CACUau ac ug u -uu uu ug U - C uccuu a ac
Annotation confidence
High
Do you think this miRNA is real?
Genome context
Crem_Contig1: 1740683-1740782 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from crm-mir-40
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature crm-miR-40-5p
| Accession | MIMAT0056827 |
| Description | Caenorhabditis remanei crm-miR-40-5p mature miRNA |
| Sequence | 18 - AGUUGAUGUUCAUCGCAGUGAUA - 40 |
| Evidence |
experimental
454 [1] |
Mature crm-miR-40-3p
| Accession | MIMAT0011505 |
| Description | Caenorhabditis remanei crm-miR-40-3p mature miRNA |
| Sequence | 63 - UCACCGGGUGUACAUCAGCUAG - 84 |
| Evidence |
experimental
454 [1] |
References
|
