Stem-loop crm-mir-35b

Accession

MI0011026

Description

Caenorhabditis remanei crm-mir-35b precursor miRNA

Literature search

1 open access papers mention crm-mir-35b
(5 sentences)

Sequence

6813 reads, 62.0 reads per million, 9 experiments

ucggugggaucggaccuaCACUGGUUUUUGCUUCGGUGAUAuuucaagaaugauuaUCACCGGGUGAAAAUCAAGGCagguccgaucucaccga
(((((((((((((((((.(..(((((((((((.((((((((..(((....))).)))))))))))))))))))..).)))))))))))))))))

Structure

                 a AC           U        uu   a 
ucggugggaucggaccu C  UGGUUUUUGCU CGGUGAUA  uca g
||||||||||||||||| |  ||||||||||| ||||||||  |||  
agccacucuagccugga G  ACUAAAAGUGG GCCACUau  agu a
                 C GA           -        -u   a 

Annotation confidence High

Genome context

Crem_Contig93: 221703-221796 [-]

Clustered miRNAs

15 other miRNAs are < 10 kb from crm-mir-35b

Mature crm-miR-35b-5p

• Accession: MIMAT0056830
• Description: Caenorhabditis remanei crm-miR-35b-5p mature miRNA
• Sequence: 19 - CACUGGUUUUUGCUUCGGUGAUA - 41
• Evidence: experimental ; 454 [1]

Mature crm-miR-35b-3p

• Accession: MIMAT0011511
• Description: Caenorhabditis remanei crm-miR-35b-3p mature miRNA
• Sequence: 57 - UCACCGGGUGAAAAUCAAGGC - 77
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074