Stem-loop crm-mir-77-1

Accession

MI0011033

Description

Caenorhabditis remanei crm-mir-77-1 precursor miRNA

Sequence

1445791 reads, 13930.0 reads per million, 9 experiments

aaacuguaaagagcuguuaguuugGAUGGCUGUGCUCUGAGGAAAUAcggcucauaaaaugucauUUCAUCAGGCCAUAGCUGUCCaaauuaucaauguucgaaaguu
.((((.....((((((.(((((((((((((((((.(((((.(((((..(((.........)))))))).))))).))))))))))))))))).))..))))...))))

Structure

a    guaaa    --  u                 C     G     Ac   uca 
 aacu     gagc  ug uaguuugGAUGGCUGUG UCUGA GAAAU  ggc   u
 ||||     ||||  || ||||||||||||||||| ||||| |||||  |||   a
 uuga     cuug  ac auuaaaCCUGUCGAUAC GGACU CUUua  cug   a
-    --aag    ua  u                 C     A     --   uaa 

Annotation confidence High

Genome context

Crem_Contig42: 93972-94079 [-]

Mature crm-miR-77-1-5p

• Accession: MIMAT0056837
• Description: Caenorhabditis remanei crm-miR-77-1-5p mature miRNA
• Sequence: 25 - GAUGGCUGUGCUCUGAGGAAAUA - 47
• Evidence: experimental ; 454 [1]

Mature crm-miR-77-3p

• Accession: MIMAT0011507
• Description: Caenorhabditis remanei crm-miR-77-3p mature miRNA
• Sequence: 66 - UUCAUCAGGCCAUAGCUGUCC - 86
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074