Stem-loop crm-mir-232-1

Accession

MI0011034

Description

Caenorhabditis remanei crm-mir-232-1 precursor miRNA

Sequence

4428 reads, 37.0 reads per million, 9 experiments

cgagguaaguugaagucugauugucggaucUCCGUAGUUUCGAUCAUUUUAUCcuaucuccaacaaagcgaUAAAUGCAUCUUAACUGCGGUGaucugaauucuuggacacuuuuuuc
.((((.((((....((((((...(((((((.((((((((..((((((((.(((((...........)).)))))))).)))..)))))))).)))))))....)))))))))).))))

Structure

c    u    ugaa      -uug       U        UC   -     U   -  aucu 
 gagg aagu    gucuga    ucggauc CCGUAGUU  GAU CAUUU AUC cu    c
 |||| ||||    ||||||    ||||||| ||||||||  ||| ||||| ||| ||    c
 cuuu uuca    cagguu    agucuaG GGCGUCAA  CUA GUAAA Uag ga    a
-    u    ----      cuua       U        UU   C     -   c  aaca 

Annotation confidence High

Genome context

Crem_Contig20: 672796-672913 [-]

Mature crm-miR-232-5p

• Accession: MIMAT0056838
• Description: Caenorhabditis remanei crm-miR-232-5p mature miRNA
• Sequence: 31 - UCCGUAGUUUCGAUCAUUUUAUC - 53
• Evidence: experimental ; 454 [1]

Mature crm-miR-232-3p

• Accession: MIMAT0011516
• Description: Caenorhabditis remanei crm-miR-232-3p mature miRNA
• Sequence: 72 - UAAAUGCAUCUUAACUGCGGUG - 93
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074