Stem-loop crm-mir-228

Accession

MI0011035

Description

Caenorhabditis remanei crm-mir-228 precursor miRNA

Gene family

MIPF0000292; mir-228

Sequence

auccuaucuuguucgcAAUGGCACUGCAUGAAUUCACGGaugcauugcgacagaccgcggaucaugcgguaccauagcggacaguggugagaua
(((.((((((((((((.((((.(((((((((.(((.(((.((........))..))).)))))))))))).)))).)))))))).)))).))).

Structure

-   c    -        A    C         A   A   -a  cau 
 auc uauc uuguucgc AUGG ACUGCAUGA UUC CGG  ug   u
 ||| |||| |||||||| |||| ||||||||| ||| |||  ||    
 uag gugg gacaggcg uacc uggcguacu agg gcc  ac   g
a   a    u        a    a         -   c   ag  agc 

Annotation confidence Not enough data

Genome context

Crem_Contig61: 99434-99527 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from crm-mir-228

Mature crm-miR-228

• Accession: MIMAT0011517
• Description: Caenorhabditis remanei crm-miR-228 mature miRNA
• Sequence: 17 - AAUGGCACUGCAUGAAUUCACGG - 39
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074