Stem-loop crm-mir-90

Accession

MI0011036

Description

Caenorhabditis remanei crm-mir-90 precursor miRNA

Sequence

1736618 reads, 14313.0 reads per million, 9 experiments

uguuugggccucacuucgagCGGUAUUCAACGACUAUCUCAAccgauauacauaccaaccgaguUGAUAUGUUGUUUGAAUGCCCCUugaacucgaggccccuaguaaaca
((((((((((((..((((((.(((((((((((((.((.(((((((..............)).))))).)))))).))))))))).))))))...))))))).....)))))

Structure

     -----       -ac      C         -    U  C     -  auauac 
uguuu     gggccuc   uucgag GGUAUUCAA CGAC AU UCAAc cg      a
|||||     |||||||   |||||| ||||||||| |||| || ||||| ||       
acaaa     cccggag   aaguUC CCGUAAGUU GUUG UA AGUug gc      u
     ugauc       cuc      C         U    -  U     a  caacca 

Annotation confidence High

Genome context

Crem_Contig186: 932-1042 [-]

Mature crm-miR-90-5p

• Accession: MIMAT0056840
• Description: Caenorhabditis remanei crm-miR-90-5p mature miRNA
• Sequence: 21 - CGGUAUUCAACGACUAUCUCAA - 42
• Evidence: experimental ; 454 [1]

Mature crm-miR-90-3p

• Accession: MIMAT0011518
• Description: Caenorhabditis remanei crm-miR-90-3p mature miRNA
• Sequence: 65 - UGAUAUGUUGUUUGAAUGCCCCU - 87
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074