Stem-loop crm-mir-238

Accession

MI0011038

Description

Caenorhabditis remanei crm-mir-238 precursor miRNA

Literature search

1 open access papers mention crm-mir-238
(1 sentences)

Sequence

416987 reads, 4303.0 reads per million, 9 experiments

agucaacguggaccacugugauaccauuUGGGUGGACACGGACGUAAAAAGCuaugcccgugguuagguauuuagcUUUGUACUCCGAUGCCAUUCaaaugguugugugguuuuggauug
((((.....(((((((......(((((((((((((.((((((.(((.(((((((((((........))))..))))))).))))))).)))))))))))))))...)))))))..)))).

Structure

-    aacgu       ugugau             A  -    C   A       --    cgu 
 aguc     ggaccac      accauuUGGGUGG CA CGGA GUA AAAGCua  ugcc   g
 ||||     |||||||      ||||||||||||| || |||| ||| |||||||  ||||    
 uuag     uuuggug      ugguaaaCUUACC GU GCCU CAU UUUcgau  augg   g
g    ---gu       ---ugu             -  A    -   G       uu    auu 

Annotation confidence Medium

Genome context

Crem_Contig431: 8580-8699 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from crm-mir-238

Mature crm-miR-238-5p

• Accession: MIMAT0056842
• Description: Caenorhabditis remanei crm-miR-238-5p mature miRNA
• Sequence: 29 - UGGGUGGACACGGACGUAAAAAGC - 52
• Evidence: experimental ; 454 [1]

Mature crm-miR-238-3p

• Accession: MIMAT0011520
• Description: Caenorhabditis remanei crm-miR-238-3p mature miRNA
• Sequence: 77 - UUUGUACUCCGAUGCCAUUC - 96
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074