Stem-loop crm-mir-75

Accession

MI0011039

Description

Caenorhabditis remanei crm-mir-75 precursor miRNA

Literature search

1 open access papers mention crm-mir-75
(1 sentences)

Sequence

19479 reads, 164.0 reads per million, 9 experiments

augcauugaugaguugAAGUCGGUUAUAAGCUUAAAUAcagaacauacccguuguuaUUAAAGCUACCAACCGACUUCagaucauacuuugcaua
(((((..(((((.((((((((((((...(((((.((((.(.(((......))).))))).)))))...)))))))))))).)))).)..))))).

Structure

-     uu -    g            AUA     A    c g   au 
 augca  g auga uugAAGUCGGUU   AGCUU AAUA a aac  a
 |||||  | |||| ||||||||||||   ||||| |||| | |||   
 uacgu  c uacu gaCUUCAGCCAA   UCGAA UUau u uug  c
a     uu a    a            CCA     A    - g   cc 

Annotation confidence High

Genome context

Crem_Contig233: 12313-12407 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from crm-mir-75

Mature crm-miR-75-5p

• Accession: MIMAT0056843
• Description: Caenorhabditis remanei crm-miR-75-5p mature miRNA
• Sequence: 17 - AAGUCGGUUAUAAGCUUAAAUA - 38
• Evidence: experimental ; 454 [1]

Mature crm-miR-75-3p

• Accession: MIMAT0011521
• Description: Caenorhabditis remanei crm-miR-75-3p mature miRNA
• Sequence: 58 - UUAAAGCUACCAACCGACUUC - 78
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074