miRBase entry: crm-mir-74b

Stem-loop crm-mir-74b


Accession
MI0011041
Description
Caenorhabditis remanei crm-mir-74b precursor miRNA


Sequence

14990 reads, 134.0 reads per million, 9 experiments
cagcccgccacacauaUGGGCUUCCUCAUCUUUCCCAGCgaaacuacuaauuacgcUGGCAAGACAAGGCAGUCUACauguguggcggugcu
.((((((((((((((.((((((.(((..((((..((((((.............)))))).))))..))).)))))).))))))))))).)))

Structure
c   -           a      U   CA    UC      aaacu 
 agc ccgccacacau UGGGCU CCU  UCUU  CCAGCg     a
 ||| ||||||||||| |||||| |||  ||||  ||||||     c
 ucg ggcggugugua AUCUGA GGA  AGAA  GGUcgc     u
-   u           C      C   AC    -C      auuaa 


Annotation confidence High
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Genome context
Crem_Contig233: 16138-16229 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from crm-mir-74b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature crm-miR-74b-5p

Accession MIMAT0056845
Description Caenorhabditis remanei crm-miR-74b-5p mature miRNA
Sequence 17 - UGGGCUUCCUCAUCUUUCCCAGC - 39
Evidence experimental
454 [1]

Mature crm-miR-74b-3p

Accession MIMAT0011523
Description Caenorhabditis remanei crm-miR-74b-3p mature miRNA
Sequence 57 - UGGCAAGACAAGGCAGUCUAC - 77
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074