Stem-loop crm-mir-73

Accession

MI0011042

Description

Caenorhabditis remanei crm-mir-73 precursor miRNA

Sequence

543570 reads, 4910.0 reads per million, 9 experiments

cagcgagaggucccucaaacgacUGAGCUUCCACGUCAAGCCUCAGCuaucgaaugaaaaauugcUGGCAAGAUGUAGGCAGUUCAGUuguaugcggagaccaauuuccuga
(((.((((((((((.((.(((((((((((.(((((((..(((..(((................))))))..))))).)).))))))))))).)).)).))))..))))))).

Structure

-   c    --    -  u  a           U  -     AA   UC   uaucgaa 
 cag gaga  gguc cc ca acgacUGAGCU CC ACGUC  GCC  AGC       u
 ||| ||||  |||| || || ||||||||||| || |||||  |||  |||        
 guc cuuu  ccag gg gu uguUGACUUGA GG UGUAG  CGG  Ucg       g
a   -    aa    a  c  a           C  A     AA   --   uuaaaaa 

Annotation confidence High

Genome context

Crem_Contig233: 16295-16406 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from crm-mir-73

Mature crm-miR-73-5p

• Accession: MIMAT0056846
• Description: Caenorhabditis remanei crm-miR-73-5p mature miRNA
• Sequence: 24 - UGAGCUUCCACGUCAAGCCUCAGC - 47
• Evidence: experimental ; 454 [1]

Mature crm-miR-73-3p

• Accession: MIMAT0011524
• Description: Caenorhabditis remanei crm-miR-73-3p mature miRNA
• Sequence: 66 - UGGCAAGAUGUAGGCAGUUCAGU - 88
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074