miRBase entry: crm-mir-61

Stem-loop crm-mir-61


Accession
MI0011044
Description
Caenorhabditis remanei crm-mir-61 precursor miRNA


Sequence

2969594 reads, 29444.0 reads per million, 9 experiments
gcguaauaucggucuuccgaguUGGGUCACGGCGCUUAGUCCUUccgacauauggcaaUGACUAGAACCUUGGCUCAGCucgggacuccgaugagca
..((..((((((..(((((((((((((((.((..((.((((.((((.......)).)).))))))..)).)))))))))))))))..)))))).)).

Structure
gc  aa      uc               C  CG  U    C  -  ga 
  gu  uaucgg  uuccgaguUGGGUCA GG  CU AGUC UU cc  c
  ||  ||||||  ||||||||||||||| ||  || |||| || ||  a
  cg  guagcc  agggcuCGACUCGGU CC  GA UCAG aa gg  u
-a  -a      uc               U  AA  -    U  c  ua 


Annotation confidence High
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Genome context
Crem_Contig5: 484744-484840 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from crm-mir-61
Name Accession Chromosome Start End Strand Confidence




Database links

Mature crm-miR-61-5p

Accession MIMAT0056848
Description Caenorhabditis remanei crm-miR-61-5p mature miRNA
Sequence 23 - UGGGUCACGGCGCUUAGUCCUU - 44
Evidence experimental
454 [1]

Mature crm-miR-61-3p

Accession MIMAT0011526
Description Caenorhabditis remanei crm-miR-61-3p mature miRNA
Sequence 59 - UGACUAGAACCUUGGCUCAGC - 79
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074