Stem-loop crm-mir-85

Accession

MI0011049

Description

Caenorhabditis remanei crm-mir-85 precursor miRNA

Sequence

284989 reads, 2523.0 reads per million, 9 experiments

agaagacguucugaagucggagcCCGUCUUUCCAAUAUUUUGAAACcaguacucaugcaaaugguUACAAAGUAUUCGAAAAGGCGUGCucugagaagagcucuuc
.(((((.(((((....(((((((.((((((((.(((((((((.(((((.............))))).))))))))).).))))))).)))))))..))))))))))

Structure

a     c     gaag       C       - C         A     guacu 
 gaaga guucu    ucggagc CGUCUUU C AAUAUUUUG AACca     c
 ||||| |||||    ||||||| ||||||| | ||||||||| |||||     a
 cuucu cgaga    agucuCG GCGGAAA G UUAUGAAAC Uuggu     u
-     -     --ag       U       A C         A     aaacg 

Annotation confidence High

Genome context

Crem_Contig1: 563160-563265 [+]

Mature crm-miR-85-5p

• Accession: MIMAT0056852
• Description: Caenorhabditis remanei crm-miR-85-5p mature miRNA
• Sequence: 24 - CCGUCUUUCCAAUAUUUUGAAAC - 46
• Evidence: experimental ; 454 [1]

Mature crm-miR-85-3p

• Accession: MIMAT0011531
• Description: Caenorhabditis remanei crm-miR-85-3p mature miRNA
• Sequence: 66 - UACAAAGUAUUCGAAAAGGCGUGC - 89
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074