Stem-loop crm-mir-43

Accession

MI0011051

Description

Caenorhabditis remanei crm-mir-43 precursor miRNA

Sequence

2987 reads, 27.0 reads per million, 9 experiments

aggcgauucugcccguGACAACAAGAAACUUGUGAUUAUGccuagagaaugaagaagggacaUAUCACAGUUUACUUGCUGUCGCaggcggugucaucug
(((.(((.(((((.((((((.(((((((((.(((((.((((((.............))).))))))))))))).)))).)))))).))))).))).))).

Structure

-   c   u     c      A    -     U     U   -   agaga 
 agg gau cugcc guGACA CAAG AAACU GUGAU AUG ccu     a
 ||| ||| ||||| |||||| |||| ||||| ||||| ||| |||     u
 ucu cug ggcgg CGCUGU GUUC UUUGA CACUA Uac ggg     g
g   a   u     a      C    A     -     -   a   aagaa 

Annotation confidence High

Genome context

Crem_Contig1: 1324406-1324505 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from crm-mir-43

Mature crm-miR-43-5p

• Accession: MIMAT0056854
• Description: Caenorhabditis remanei crm-miR-43-5p mature miRNA
• Sequence: 17 - GACAACAAGAAACUUGUGAUUAUG - 40
• Evidence: experimental ; 454 [1]

Mature crm-miR-43-3p

• Accession: MIMAT0011533
• Description: Caenorhabditis remanei crm-miR-43-3p mature miRNA
• Sequence: 63 - UAUCACAGUUUACUUGCUGUCGC - 85
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074