Stem-loop crm-mir-239b

Accession

MI0011054

Description

Caenorhabditis remanei crm-mir-239b precursor miRNA

Sequence

aagacaacuugcaauuUUUGUACUGCACAAAAGCUCUGacugcucugauauggcucagcacuuuugucugugcaaaaauggcgaauaucugucuuu
((((((..((((.((((((((((.(.(((((((..((((..((.(......)))))))..)))))))).)))))))))).)))).....)))))).

Structure

-      ---ac    a          U C       CU    cu  u ug 
 aagaca     uugc auuUUUGUAC G ACAAAAG  CUGa  gc c  a
 ||||||     |||| |||||||||| | |||||||  ||||  || |   
 uucugu     agcg uaaaaacgug c uguuuuc  gacu  cg g  u
u      cuaua    g          u -       ac    --  - ua 

Annotation confidence Low

Genome context

Crem_Contig93: 352923-353018 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from crm-mir-239b

Mature crm-miR-239b

• Accession: MIMAT0011536
• Description: Caenorhabditis remanei crm-miR-239b mature miRNA
• Sequence: 17 - UUUGUACUGCACAAAAGCUCUG - 38
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074