Stem-loop crm-mir-787

Accession

MI0011056

Description

Caenorhabditis remanei crm-mir-787 precursor miRNA

Literature search

1 open access papers mention crm-mir-787
(7 sentences)

Sequence

160781 reads, 1658.0 reads per million, 9 experiments

uccacauggauaugugggaccaguggaugAGGGAAACUAGUCGAUCUCACAcuaauuugacagaaugUAAGCUCGUCUUUGUUUUCCUGCaucucuggucccccaacuuguucaaugg
.(((..((((((.((((((((((.(((((((((((((.((.(((.((.(((((........))..))).)).))).))..)))))))).)))))))))))))...)).)))))).)))

Structure

u   ca      u  ---        u     -        -U  U   U  C   --  aau 
 cca  uggaua gu   gggaccag ggaug AGGGAAAC  AG CGA CU ACA  cu   u
 |||  |||||| ||   |||||||| ||||| ||||||||  || ||| || |||  ||    
 ggu  acuugu ca   cccugguc ucuaC UCCUUUUG  UC GCU GA Ugu  ga   u
-   -a      u  acc        -     G        UU  U   C  A   aa  cag 

Annotation confidence High

Genome context

Crem_Contig15: 964417-964534 [+]

Mature crm-miR-787-5p

• Accession: MIMAT0056856
• Description: Caenorhabditis remanei crm-miR-787-5p mature miRNA
• Sequence: 30 - AGGGAAACUAGUCGAUCUCACA - 51
• Evidence: experimental ; 454 [1]

Mature crm-miR-787-3p

• Accession: MIMAT0011537
• Description: Caenorhabditis remanei crm-miR-787-3p mature miRNA
• Sequence: 68 - UAAGCUCGUCUUUGUUUUCCUGC - 90
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074