Stem-loop crm-mir-34

Accession

MI0011057

Description

Caenorhabditis remanei crm-mir-34 precursor miRNA

Sequence

79165 reads, 643.0 reads per million, 9 experiments

ggacggugcucgagAGGCAGUGUGGUUAGCUGGUUGcauauugaauugacaACGGCUACCUUCACUGCCACCccgaacauguagucca
((((.(((.(((.(.(((((((.((.((((((.(((((........)).))))))))).)).)))))))..).))).)))...)))).

Structure

-    --g   c   a -A       U  U      G   -  uau 
 ggac   gug ucg g  GGCAGUG GG UAGCUG UUG ca   u
 ||||   ||| ||| |  ||||||| || |||||| ||| ||    
 ccug   uac agc C  CCGUCAC UC AUCGGC Aac gu   g
a    aug   a   c CA       U  C      -   a  uaa 

Annotation confidence High

Genome context

Crem_Contig15: 1362286-1362373 [+]

Mature crm-miR-34-5p

• Accession: MIMAT0011538
• Description: Caenorhabditis remanei crm-miR-34-5p mature miRNA
• Sequence: 15 - AGGCAGUGUGGUUAGCUGGUUG - 36
• Evidence: experimental ; 454 [1]

Mature crm-miR-34-3p

• Accession: MIMAT0056857
• Description: Caenorhabditis remanei crm-miR-34-3p mature miRNA
• Sequence: 52 - ACGGCUACCUUCACUGCCACC - 72
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074