miRBase entry: crm-mir-233

Stem-loop crm-mir-233


Accession
MI0011059
Description
Caenorhabditis remanei crm-mir-233 precursor miRNA


Sequence

7180 reads, 58.0 reads per million, 9 experiments
ugaagcgucucucugucCCGCUCAUCCUGUUGUUCCAAUAuuccaacagcccagugauuaUUGAGCAAUGCGCAUGUGCGGGacagauuguaugcugccau
...((((((..((((((((((.((((.((((((((.((((.((..((......)))).)))))))))))).).))).))))))))))..).))))).....

Structure
--uga     - uc          U   - C        C    u  ca  ag 
     agcgu c  ucugucCCGC CAU C UGUUGUUC AAUA uc  ac  c
     ||||| |  |||||||||| ||| | |||||||| |||| ||  ||   
     ucgua g  agacaGGGCG GUA G GUAACGAG UUau ag  ug  c
uaccg     u uu          U   C C        -    u  --  ac 


Annotation confidence High
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Genome context
Crem_Contig25: 189024-189124 [+]

Database links

Mature crm-miR-233-5p

Accession MIMAT0056859
Description Caenorhabditis remanei crm-miR-233-5p mature miRNA
Sequence 18 - CCGCUCAUCCUGUUGUUCCAAUA - 40
Evidence experimental
454 [1]

Mature crm-miR-233-3p

Accession MIMAT0011540
Description Caenorhabditis remanei crm-miR-233-3p mature miRNA
Sequence 61 - UUGAGCAAUGCGCAUGUGCGGG - 82
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074