Stem-loop crm-mir-47

Accession

MI0011061

Description

Caenorhabditis remanei crm-mir-47 precursor miRNA

Sequence

1324775 reads, 11595.0 reads per million, 9 experiments

gaaaaaagccgagugagacugAAGAGAGCAUUCUGUUGACAGUucgauuccgaacuccuacUGUCAUGGAGGCGCUCUCUUCaggugaucucuggcuaguuuuuc
(((((((((((((.....(((((((((((.((((((.((((((..((........))..))))))))))))..))))))))))).....))).))))..))))))

Structure

      --    -   ugaga           -A      U      uc  uuc 
gaaaaa  agcc gag     cugAAGAGAGC  UUCUGU GACAGU  ga   c
||||||  |||| |||     |||||||||||  |||||| ||||||  ||    
cuuuuu  ucgg cuc     gaCUUCUCUCG  GAGGUA CUGUca  cu   g
      ga    u   uagug           CG      -      uc  caa 

Annotation confidence High

Genome context

Crem_Contig31: 438956-439060 [+]

Mature crm-miR-47-5p

• Accession: MIMAT0056861
• Description: Caenorhabditis remanei crm-miR-47-5p mature miRNA
• Sequence: 22 - AAGAGAGCAUUCUGUUGACAGU - 43
• Evidence: experimental ; 454 [1]

Mature crm-miR-47-3p

• Accession: MIMAT0011542
• Description: Caenorhabditis remanei crm-miR-47-3p mature miRNA
• Sequence: 62 - UGUCAUGGAGGCGCUCUCUUC - 82
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074