Stem-loop crm-mir-236

Accession

MI0011065

Description

Caenorhabditis remanei crm-mir-236 precursor miRNA

Literature search

1 open access papers mention crm-mir-236
(1 sentences)

Sequence

69397 reads, 574.0 reads per million, 9 experiments

ucuuuggugaccgauguccagcGUCUUACCUGUUCAAUAUUUAGAcugauuagcucaugagaucUAAUACUGUCAGGUAAUGACGCUggauuaucuugucauuuauga
((...((((((.((((((((((((((((((((..((.((((.(((((.((......)).)).))))))).)).))))))).))))))))).))))..))))))...))

Structure

  uuu      -c    -         -       UU  A    U   -  g  ua 
uc   ggugac  gaug uccagcGUC UUACCUG  CA UAUU AGA cu au  g
||   ||||||  |||| ||||||||| |||||||  || |||| ||| || ||   
ag   uuacug  cuau aggUCGCAG AAUGGAC  GU AUAA Ucu ga ua  c
  uau      uu    u         U       -U  C    -   a  g  cu 

Annotation confidence High

Genome context

Crem_Contig6: 993548-993655 [+]

Mature crm-miR-236-5p

• Accession: MIMAT0056864
• Description: Caenorhabditis remanei crm-miR-236-5p mature miRNA
• Sequence: 23 - GUCUUACCUGUUCAAUAUUUAGA - 45
• Evidence: experimental ; 454 [1]

Mature crm-miR-236-3p

• Accession: MIMAT0011546
• Description: Caenorhabditis remanei crm-miR-236-3p mature miRNA
• Sequence: 65 - UAAUACUGUCAGGUAAUGACGCU - 87
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074