Stem-loop crm-mir-55

Accession

MI0011070

Description

Caenorhabditis remanei crm-mir-55 precursor miRNA

Gene family

MIPF0000270; mir-55

Sequence

agaguccagacucggaaagucgcaugggacuCGGCAGAAGCACUUGGGGUAUacuucacagaguaacuaUACCCGUAUUUGUUUCUGCUGAGccccugacaccaguucgguacuu
.((((((.((((.((...((((...(((.(((((((((((((..((((((((((((....)))))....))))).))..)))))))))))))))).)))).)))))).)).))))

Structure

a    -  a    c  aaa    cau   a             CU  -     ----     c 
 gagu cc gacu gg   gucg   ggg cuCGGCAGAAGCA  UG GGGUA    Uacuu a
 |||| || |||| ||   ||||   ||| |||||||||||||  || |||||    |||||  
 uuca gg uuga cc   cagu   ccc GAGUCGUCUUUGU  AU CCCAU    augag c
-    u  c    -  --a    --c   -             UU  G     auca     a 

Annotation confidence Not enough data

Genome context

Crem_Contig43: 489184-489298 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from crm-mir-55

Mature crm-miR-55-5p

• Accession: MIMAT0011551
• Description: Caenorhabditis remanei crm-miR-55-5p mature miRNA
• Sequence: 32 - CGGCAGAAGCACUUGGGGUAU - 52
• Evidence: experimental ; 454 [1]

Mature crm-miR-55-3p

• Accession: MIMAT0011552
• Description: Caenorhabditis remanei crm-miR-55-3p mature miRNA
• Sequence: 70 - UACCCGUAUUUGUUUCUGCUGAG - 92
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074