Stem-loop crm-mir-48

Accession

MI0011076

Description

Caenorhabditis remanei crm-mir-48 precursor miRNA

Gene family

MIPF0000235; mir-48

Sequence

cauaccggauguUGAGGUAGGCUCAGUAGAUGCGaucagaguugugccucaggcguuccucACAUCUUCUUGCCUAACUCGCCuuccuuuaugu
((((..(((.(.((((.(((((..((.(((((.((...(((...((((...))))))).)).))))).)).))))).)))).).)))..)))).

Structure

-    cc   u u    G     UC  U     C  uca   uug    u 
 caua  gga g UGAG UAGGC  AG AGAUG Ga   gag   ugcc  
 ||||  ||| | |||| |||||  || ||||| ||   |||   |||| c
 guau  ccu C GCUC AUCCG  UC UCUAC cu   cuu   gcgg  
u    uu   u C    A     -U  U     A  --c   ---    a 

Annotation confidence Not enough data

Genome context

Crem_Contig8: 84279-84372 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from crm-mir-48

Mature crm-miR-48-5p

• Accession: MIMAT0011563
• Description: Caenorhabditis remanei crm-miR-48-5p mature miRNA
• Sequence: 13 - UGAGGUAGGCUCAGUAGAUGCG - 34
• Evidence: experimental ; 454 [1]

Mature crm-miR-48-3p

• Accession: MIMAT0011564
• Description: Caenorhabditis remanei crm-miR-48-3p mature miRNA
• Sequence: 62 - ACAUCUUCUUGCCUAACUCGCC - 83
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074