Stem-loop crm-mir-246-1

Accession

MI0011081

Description

Caenorhabditis remanei crm-mir-246-1 precursor miRNA

Sequence

69071 reads, 601.0 reads per million, 9 experiments

aguccaaacaauagaacagcACCUGGCCGAUUUCAUGUAAUAucugaaaagaaaagauaUUACAUGUAUCGGGUAGGAGCuguuugaguaaaggau
.((((........(((((((.((((.(((((..((((((((((((.........)))))))))))).))))).)))).))))))).......))))

Structure

a    aaacaaua       A    G     UU            gaa 
 gucc        gaacagc CCUG CCGAU  CAUGUAAUAucu   a
 ||||        ||||||| |||| |||||  ||||||||||||   a
 uagg        uuuguCG GGAU GGCUA  GUACAUUauaga   g
-    -aaaugag       A    G     -U            aaa 

Annotation confidence High

Genome context

Crem_Contig1306: 7301-7396 [-]

Mature crm-miR-246-5p

• Accession: MIMAT0011571
• Description: Caenorhabditis remanei crm-miR-246-5p mature miRNA
• Sequence: 21 - ACCUGGCCGAUUUCAUGUAAUA - 42
• Evidence: experimental ; 454 [1]

Mature crm-miR-246-3p

• Accession: MIMAT0011572
• Description: Caenorhabditis remanei crm-miR-246-3p mature miRNA
• Sequence: 60 - UUACAUGUAUCGGGUAGGAGC - 80
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074