Stem-loop crm-mir-2

Accession

MI0011082

Description

Caenorhabditis remanei crm-mir-2 precursor miRNA

Sequence

86290 reads, 719.0 reads per million, 9 experiments

auaguauacggaaagcCCGUCAAAGUGGCUCGUGUUAUGuugaaucuugaaguaaucaUAUCACAGCCAGCUUUGAUGUGcuuccugaaguacuau
(((((((.(((.((((.(((((((((((((.(((.((((.................)))).)))))))).)))))))).)))).)))..)))))))

Structure

       -a   a    C        -     C   U    uugaauc 
auaguau  cgg aagc CGUCAAAG UGGCU GUG UAUG       u
|||||||  ||| |||| |||||||| ||||| ||| ||||       u
uaucaug  guc uucG GUAGUUUC ACCGA CAC AUac       g
       aa   c    U        G     -   U    uaaugaa 

Annotation confidence High

Genome context

Crem_Contig68: 361255-361350 [-]

Mature crm-miR-2-5p

• Accession: MIMAT0011573
• Description: Caenorhabditis remanei crm-miR-2-5p mature miRNA
• Sequence: 17 - CCGUCAAAGUGGCUCGUGUUAUG - 39
• Evidence: experimental ; 454 [1]

Mature crm-miR-2-3p

• Accession: MIMAT0011574
• Description: Caenorhabditis remanei crm-miR-2-3p mature miRNA
• Sequence: 59 - UAUCACAGCCAGCUUUGAUGUG - 80
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074