Stem-loop crm-mir-250

Accession

MI0011085

Description

Caenorhabditis remanei crm-mir-250 precursor miRNA

Gene family

MIPF0000283; mir-250

Sequence

gcuguuauucgaaggucuucggaccgccCCUUCAGUUGACUCGUGAUCCGccgacuuugauauauggacgAAUCACAGUCACCUGAUGGUacggucuuugaauuccuauauuauuauggu
(((((.......(((..(((((((((..((.((((.(((((.(((((.((((.............)).)).)))))))))).)))).))..))))))..)))..)))........)))))

Structure

     -uauucga   uc   --      cc  U    U     C     C  -  gacuu 
gcugu        agg  uuc  ggaccg  CC UCAG UGACU GUGAU CG cc     u
|||||        |||  |||  ||||||  || |||| ||||| ||||| || ||     g
uggua        ucc  aag  ucuggc  GG AGUC ACUGA CACUA gc gg     a
     uuauuaua   uu   uu      aU  U    C     -     A  a  uauau 

Annotation confidence Not enough data

Genome context

Crem_Contig5: 484593-484712 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from crm-mir-250

Mature crm-miR-250-5p

• Accession: MIMAT0011579
• Description: Caenorhabditis remanei crm-miR-250-5p mature miRNA
• Sequence: 29 - CCUUCAGUUGACUCGUGAUCCG - 50
• Evidence: experimental ; 454 [1]

Mature crm-miR-250-3p

• Accession: MIMAT0011580
• Description: Caenorhabditis remanei crm-miR-250-3p mature miRNA
• Sequence: 71 - AAUCACAGUCACCUGAUGGU - 90
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074