Stem-loop crm-mir-86

Accession

MI0011088

Description

Caenorhabditis remanei crm-mir-86 precursor miRNA

Sequence

114405 reads, 984.0 reads per million, 9 experiments

acgagucggcgccgucUAAGUGAAUGCUUUGCCACAGUCuucgaccaugucaaaugaagcCUGGGCUAAGAUUCGCUUAGGCcggcguuuuucgacacgg
.((.(((((((((((((((((((((.(((.(((.(((.(((((((...)))....)))).)))))).)))))))))))))).))))))....)))).)).

Structure

a  a    ----      -           G   U   A   U    ----   c 
 cg gucg    gcgccg ucUAAGUGAAU CUU GCC CAG Cuuc    gac  
 || ||||    |||||| ||||||||||| ||| ||| ||| ||||    ||| a
 gc cagc    ugcggc GGAUUCGCUUA GAA CGG GUC gaag    cug  
g  a    uuuu      C           -   U   -   c    uaaa   u 

Annotation confidence High

Genome context

Crem_Contig40: 194137-194236 [+]

Mature crm-miR-86-5p

• Accession: MIMAT0011585
• Description: Caenorhabditis remanei crm-miR-86-5p mature miRNA
• Sequence: 17 - UAAGUGAAUGCUUUGCCACAGUC - 39
• Evidence: experimental ; 454 [1]

Mature crm-miR-86-3p

• Accession: MIMAT0011586
• Description: Caenorhabditis remanei crm-miR-86-3p mature miRNA
• Sequence: 61 - CUGGGCUAAGAUUCGCUUAGGC - 82
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074