Stem-loop crm-mir-50

Accession

MI0011090

Description

Caenorhabditis remanei crm-mir-50 precursor miRNA

Sequence

545740 reads, 4635.0 reads per million, 9 experiments

cccacccccuggccgcUGAUAUGUCUGGUAUUCUUGGGUucgauacucugaaaaacgaaCCAAAGUAGCAGACGUAUCGACggccgggaggguggg
(((((((((((((((.(((((((((((.((((....((((((.............))))))..)))).))))))))))).)))))))).)))))))

Structure

       -        c           G    CUUG      auacu 
cccaccc ccuggccg UGAUAUGUCUG UAUU    GGUucg     c
||||||| |||||||| ||||||||||| ||||    ||||||     u
ggguggg gggccggC GCUAUGCAGAC AUGA    CCaagc     g
       a        A           G    --AA      aaaaa 

Annotation confidence High

Genome context

Crem_Contig11: 669942-670037 [-]

Mature crm-miR-50-5p

• Accession: MIMAT0011589
• Description: Caenorhabditis remanei crm-miR-50-5p mature miRNA
• Sequence: 17 - UGAUAUGUCUGGUAUUCUUGGGU - 39
• Evidence: experimental ; 454 [1]

Mature crm-miR-50-3p

• Accession: MIMAT0011590
• Description: Caenorhabditis remanei crm-miR-50-3p mature miRNA
• Sequence: 60 - CCAAAGUAGCAGACGUAUCGAC - 81
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074