Stem-loop crm-lin-4

Accession

MI0011095

Description

Caenorhabditis remanei crm-lin-4 precursor miRNA

Literature search

1 open access papers mention crm-lin-4
(2 sentences)

Sequence

140404 reads, 1277.0 reads per million, 9 experiments

auguucugaugcuuucggccugcUCCCUGAGACCUCAAGUGUGAgcgcacuguugaugcuucACGCCUGGGCUCUCUGGGUACCAGgacggcuugagcagacau
(((((....((((((((.((((..(((.((((.((((.(((((((.((((....).)))))))))).)))).)))).)))...)))).)))...))))))))))

Structure

     cuga     ---   g    -cU   U    C    A       c   - u 
auguu    ugcuu   ucg ccug   CCC GAGA CUCA GUGUGAg gca c g
|||||    |||||   ||| ||||   ||| |||| |||| ||||||| ||| |  
uacag    acgag   ggc gGAC   GGG CUCU GGGU CGCAcuu cgu g u
     ----     uuc   a    CAU   U    C    C       -   a u 

Annotation confidence Medium

Genome context

Crem_Contig17: 1151377-1151480 [+]

Mature crm-lin-4-5p

• Accession: MIMAT0011599
• Description: Caenorhabditis remanei crm-lin-4-5p mature miRNA
• Sequence: 24 - UCCCUGAGACCUCAAGUGUGA - 44
• Evidence: experimental ; 454 [1]

Mature crm-lin-4-3p

• Accession: MIMAT0011600
• Description: Caenorhabditis remanei crm-lin-4-3p mature miRNA
• Sequence: 63 - ACGCCUGGGCUCUCUGGGUACCAG - 86
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074