Stem-loop crm-mir-38

Accession

MI0011099

Description

Caenorhabditis remanei crm-mir-38 precursor miRNA

Sequence

9638 reads, 93.0 reads per million, 9 experiments

uccgauugguugaaagagccagaaccuauACCGGUUUAACUUCGUGGUGAUAugacacauauuacauucuuuaUCACCGGGAGUAAAACUGGUAUaggaucugcgacucgcugauuggaa
((((((((((.....((((((((.(((((((((((((.(((((.((((((((...................))))))))))))).))))))))))))).)))).).))))))))))))).

Structure

-          ugaaa   - -    a             A     G        ugacacau 
 uccgauuggu     gag c caga ccuauACCGGUUU ACUUC UGGUGAUA        a
 ||||||||||     ||| | |||| ||||||||||||| ||||| ||||||||        u
 agguuagucg     cuc g gucu ggaUAUGGUCAAA UGAGG GCCACUau        u
a          -----   a c    a             A     -        uucuuaca 

Annotation confidence High

Genome context

Crem_Contig1: 1740947-1741066 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from crm-mir-38

Mature crm-miR-38-5p

• Accession: MIMAT0056868
• Description: Caenorhabditis remanei crm-miR-38-5p mature miRNA
• Sequence: 30 - ACCGGUUUAACUUCGUGGUGAUA - 52
• Evidence: experimental ; 454 [1]

Mature crm-miR-38-3p

• Accession: MIMAT0011603
• Description: Caenorhabditis remanei crm-miR-38-3p mature miRNA
• Sequence: 74 - UCACCGGGAGUAAAACUGGUAU - 95
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074