Stem-loop crm-mir-357

Accession

MI0011100

Description

Caenorhabditis remanei crm-mir-357 precursor miRNA

Sequence

365 reads, 4.0 reads per million, 9 experiments

ucaacgaugugcugccuaacagcggauUCCAGUAACUCUGAGCAUAUAcaugaaguuucaaaacaaugUAAAUGCCAGUCGUUGCUGGAAUucgauaagcacucgugac
(((.(((.(((((.........((((((((((((((.(((.((((.(((((...(((....))).))))).)))))))..))))))))))))))...))))))))))).

Structure

-   a   u     gccuaacag              -U   A    A     gaa   u 
 uca cga gugcu         cggauUCCAGUAAC  CUG GCAU UAcau   guu c
 ||| ||| |||||         ||||||||||||||  ||| |||| |||||   |||  
 agu gcu cacga         gcuUAAGGUCGUUG  GAC CGUA AUgua   caa a
c   -   -     ------aua              CU   -    A     --a   a 

Annotation confidence High

Genome context

Crem_Contig13: 949367-949475 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from crm-mir-357

Mature crm-miR-357-5p

• Accession: MIMAT0056869
• Description: Caenorhabditis remanei crm-miR-357-5p mature miRNA
• Sequence: 28 - UCCAGUAACUCUGAGCAUAUA - 48
• Evidence: experimental ; 454 [1]

Mature crm-miR-357-3p

• Accession: MIMAT0011604
• Description: Caenorhabditis remanei crm-miR-357-3p mature miRNA
• Sequence: 69 - UAAAUGCCAGUCGUUGCUGGAAU - 91
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074