Stem-loop crm-mir-35d-2

Accession

MI0011102

Description

Caenorhabditis remanei crm-mir-35d-2 precursor miRNA

Sequence

180540 reads, 1737.0 reads per million, 9 experiments

uggucggaucggccauuCACUGGUUCUCGCCGCGGUCAUAuuucaaauaugauuaUCACCGGGUGAAAAUCAGAGCagggccgaucccaccg
.(((.(((((((((.....((((((.(((((.((((.(((..(((....))).))).))))))))).)))))).....))))))))).))).

Structure

u   c         auuCA      C     G    C   uu   a 
 ggu ggaucggcc     CUGGUU UCGCC CGGU AUA  uca a
 ||| |||||||||     |||||| ||||| |||| |||  |||  
 cca ccuagccgg     GACUAA AGUGG GCCA Uau  agu u
g   c         gaCGA      A     -    C   -u   a 

Annotation confidence High

Genome context

Crem_Contig93: 223544-223635 [-]

Clustered miRNAs

15 other miRNAs are < 10 kb from crm-mir-35d-2

Mature crm-miR-35d-2-5p

• Accession: MIMAT0056871
• Description: Caenorhabditis remanei crm-miR-35d-2-5p mature miRNA
• Sequence: 18 - CACUGGUUCUCGCCGCGGUCAUA - 40
• Evidence: experimental ; 454 [1]

Mature crm-miR-35d-3p

• Accession: MIMAT0011739
• Description: Caenorhabditis remanei crm-miR-35d-3p mature miRNA
• Sequence: 56 - UCACCGGGUGAAAAUCAGAGC - 76
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074