Stem-loop crm-mir-59

Accession

MI0011103

Description

Caenorhabditis remanei crm-mir-59 precursor miRNA

Literature search

1 open access papers mention crm-mir-59
(1 sentences)

Sequence

412512 reads, 3977.0 reads per million, 9 experiments

uguucccuugauucauagaugacaUCGUCCUGAAAACGAAGCGAAAcuaacaucagaagauaagauuUCGAAUCGUUUAUCAGGAUGAUGucauuauugaaacauucauuuuugguaaug
........((.((((..((((((((((((((((((((((..(((((((...(((....))).)).)))))..)))))).))))))))))))))))..)))).))................

Structure

--------uguucccu  a    ua                -      AG     -  aac   a 
                ug uuca  gaugacaUCGUCCUGA AAACGA  CGAAA cu   auc g
                || ||||  |||||||||||||||| ||||||  ||||| ||   |||  
                ac aagu  uuacuGUAGUAGGACU UUUGCU  GCUuu ga   uag a
guaaugguuuuuacuu  a    ua                A      AA     a  --a   a 

Annotation confidence High

Genome context

Crem_Contig20: 889052-889171 [-]

Mature crm-miR-59-5p

• Accession: MIMAT0056873
• Description: Caenorhabditis remanei crm-miR-59-5p mature miRNA
• Sequence: 25 - UCGUCCUGAAAACGAAGCGAAA - 46
• Evidence: experimental ; 454 [1]

Mature crm-miR-59-3p

• Accession: MIMAT0011606
• Description: Caenorhabditis remanei crm-miR-59-3p mature miRNA
• Sequence: 68 - UCGAAUCGUUUAUCAGGAUGAUG - 90
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074