Stem-loop crm-mir-790-1

Accession

MI0011105

Description

Caenorhabditis remanei crm-mir-790-1 precursor miRNA

Gene family

MIPF0000362; mir-790

Sequence

uucgaaucaaggucccuuuugacugCUUGGCACUCGCGAACACCGCGaucuuaucagauaaaucgcggaguuagccgguggcaaccaggcgaauguuugagacucacuuuuugaa
.(((((....((((((.((((.(((.(((.((((.((.(((.(((((((.((((...))))))))))).))).)).)))).))).))).)))).)...).)))).....))))).

Structure

u     -ucaa    - --- u    a   C   G    C  G   A       c    c 
 ucgaa     gguc c   c uuug cug UUG CACU GC AAC CCGCGau uuau  
 |||||     |||| |   | |||| ||| ||| |||| || ||| ||||||| |||| a
 aguuu     ucag g   g aagc gac aac gugg cg uug ggcgcua aaua  
a     uucac    a uuu u    g   c   g    c  a   a       -    g 

Annotation confidence Not enough data

Genome context

Crem_Contig61: 95769-95883 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from crm-mir-790-1

Mature crm-miR-790

• Accession: MIMAT0011543
• Description: Caenorhabditis remanei crm-miR-790 mature miRNA
• Sequence: 26 - CUUGGCACUCGCGAACACCGCG - 47
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074