Stem-loop crm-mir-253

Accession

MI0011107

Description

Caenorhabditis remanei crm-mir-253 precursor miRNA

Literature search

1 open access papers mention crm-mir-253
(1 sentences)

Sequence

59277 reads, 734.0 reads per million, 9 experiments

guucgaguuuccaccCUUUUCACACACCUCACUAACAcuaaacacagauugauagaugUUAGUAGGCGUUGUGGGAAGGGcggcgaugacgagc
(((((.(((.((.((((((((((((.(((.((((((((((............))).)))))))))).).))))))))))).)).)))..)))))

Structure

     -a   u  a           - A   C       -   aacac 
guucg  guu cc ccCUUUUCACA C CCU ACUAACA cua     a
|||||  ||| || ||||||||||| | ||| ||||||| |||      
cgagc  uag gg GGGAAGGGUGU G GGA UGAUUgu gau     g
     ag   c  c           U C   -       a   aguua 

Annotation confidence High

Genome context

Crem_Contig8: 1135636-1135729 [-]

Mature crm-miR-253-5p

• Accession: MIMAT0056876
• Description: Caenorhabditis remanei crm-miR-253-5p mature miRNA
• Sequence: 16 - CUUUUCACACACCUCACUAACA - 37
• Evidence: experimental ; 454 [1]

Mature crm-miR-253-3p

• Accession: MIMAT0011609
• Description: Caenorhabditis remanei crm-miR-253-3p mature miRNA
• Sequence: 59 - UUAGUAGGCGUUGUGGGAAGGG - 80
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074