Stem-loop crm-mir-245

Accession

MI0011108

Description

Caenorhabditis remanei crm-mir-245 precursor miRNA

Sequence

44075 reads, 357.0 reads per million, 9 experiments

aaaguacucaaugucgaagaGCUGCUUGCAAGGUACCUAAUUGuuugcacauuucucaAUUGGUCCCCUCCAAGUAGCUCuauugcauuguuuguuuua
((((((..(((((.((((((((((((((...((.(((.(((((.............)))))))).))...))))))))))).))))))))..)))))).

Structure

-      cu     u   -           CAA  U   U     uuugc 
 aaagua  caaug cga agaGCUGCUUG   GG ACC AAUUG     a
 ||||||  ||||| ||| |||||||||||   || ||| |||||     c
 uuuugu  guuac guu uCUCGAUGAAC   CC UGG UUAac     a
a      uu     -   a           CUC  C   -     ucuuu 

Annotation confidence High

Genome context

Crem_Contig143: 167381-167479 [+]

Mature crm-miR-245-5p

• Accession: MIMAT0056877
• Description: Caenorhabditis remanei crm-miR-245-5p mature miRNA
• Sequence: 21 - GCUGCUUGCAAGGUACCUAAUUG - 43
• Evidence: experimental ; 454 [1]

Mature crm-miR-245-3p

• Accession: MIMAT0011610
• Description: Caenorhabditis remanei crm-miR-245-3p mature miRNA
• Sequence: 59 - AUUGGUCCCCUCCAAGUAGCUC - 80
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074