Stem-loop crm-mir-241

Accession

MI0011110

Description

Caenorhabditis remanei crm-mir-241 precursor miRNA

Gene family

MIPF0000248; mir-241

Sequence

caaaaaagcgacgugucaaaguAGAGGUAGGUGCGAGAAAUGacggaaccucacaaaucaucguucauugucucgcagcugcuucaacugugcccacugacgcaaaucaacuuuuuu
.......(((.((((.((.(((.(((((((.((((((((((((..((.............))..))))).))))))).))))))).))).))..))).).)))..............

Structure

-------caaaaaa   a -   -u  a   A       G       -     cg  accuc 
              gcg c gug  ca agu GAGGUAG UGCGAGA AAUGa  ga     a
              ||| | |||  || ||| ||||||| ||||||| |||||  ||     c
              cgc g cac  gu uca cuucguc acgcucu uuacu  cu     a
uuuuuucaacuaaa   a u   cc  g   a       g       g     ug  acuaa 

Annotation confidence Not enough data

Genome context

Crem_Contig8: 82873-82989 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from crm-mir-241

Mature crm-miR-241

• Accession: MIMAT0011612
• Description: Caenorhabditis remanei crm-miR-241 mature miRNA
• Sequence: 23 - AGAGGUAGGUGCGAGAAAUG - 42
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074