Stem-loop crm-mir-35c-3

Accession

MI0011111

Description

Caenorhabditis remanei crm-mir-35c-3 precursor miRNA

Sequence

16841 reads, 159.0 reads per million, 9 experiments

ucggucggaucggaccucCACUGGUUUUAGCUUCGGUGAUAuuucuagaaugauuaUCACCGGGUGAAAAUCAGGGCAgguccgaucccaucgau
(((((.(((((((((((((.((((((((.(((.((((((((..((......)).))))))))))).)))))))))).))))))))))).))))).

Structure

-     c           -  A        A   U        uu  ua 
 ucggu ggaucggaccu cC CUGGUUUU GCU CGGUGAUA  uc  g
 ||||| ||||||||||| || |||||||| ||| ||||||||  ||   
 agcua ccuagccuggA GG GACUAAAA UGG GCCACUau  ag  a
u     c           C  -        G   -        -u  ua 

Annotation confidence Medium

Genome context

Crem_Contig93: 223069-223163 [-]

Clustered miRNAs

15 other miRNAs are < 10 kb from crm-mir-35c-3

Mature crm-miR-35c-5p

• Accession: MIMAT0011613
• Description: Caenorhabditis remanei crm-miR-35c-5p mature miRNA
• Sequence: 19 - CACUGGUUUUAGCUUCGGUGAUA - 41
• Evidence: experimental ; 454 [1]

Mature crm-miR-35c-3p

• Accession: MIMAT0011512
• Description: Caenorhabditis remanei crm-miR-35c-3p mature miRNA
• Sequence: 57 - UCACCGGGUGAAAAUCAGGGCA - 78
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074